Detailed information of SNP:
|
SNP ID:
sf0610434246(Gbrowse)
Chromosome: chr06 Position: 10434246 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.46% | 49.54% |
| All Indica | 798 | 19.67% | 80.33% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 8.53% | 91.47% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610434246 | G->T | INTERGENIC | None |