Detailed information of SNP:
|
SNP ID:
sf0610434286(Gbrowse)
Chromosome: chr06 Position: 10434286 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.90% | 42.10% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 11.07% | 88.93% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610434286 | C->T | INTERGENIC | None |