Detailed information of SNP:
|
SNP ID:
sf0610437539(Gbrowse)
Chromosome: chr06 Position: 10437539 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 79.32% | 20.68% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 496 | 66.33% | 33.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610437539 | G->A | LOC_Os06g17950(LOC_Os06g17950.1) | UTR_5_PRIME |