Detailed information of SNP:
|
SNP ID:
sf0610441149(Gbrowse)
Chromosome: chr06 Position: 10441149 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 92.64% | 7.36% |
| All Indica | 794 | 94.08% | 5.92% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610441149 | T->C | INTERGENIC | None |