Detailed information of SNP:
|
SNP ID:
sf0610441618(Gbrowse)
Chromosome: chr06 Position: 10441618 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 88.20% | 11.80% |
| All Indica | 795 | 86.67% | 13.33% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610441618 | A->G | INTERGENIC | None |