Detailed information of SNP:
|
SNP ID:
sf0610443116(Gbrowse)
Chromosome: chr06 Position: 10443116 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 92.26% | 7.74% |
| All Indica | 782 | 92.84% | 7.16% |
| All Japonica | 492 | 90.04% | 9.96% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 200 | 90.00% | 10.00% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 332 | 85.24% | 14.76% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610443116 | T->C | INTERGENIC | None |