Detailed information of SNP:
|
SNP ID:
sf0610443949(Gbrowse)
Chromosome: chr06 Position: 10443949 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 71.71% | 28.29% |
| All Indica | 771 | 64.72% | 35.28% |
| All Japonica | 497 | 78.67% | 21.33% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 359 | 69.92% | 30.08% |
| Indica II | 204 | 75.49% | 24.51% |
| Indica Intermediate | 208 | 45.19% | 54.81% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610443949 | T->C | INTERGENIC | None |