Detailed information of SNP:
|
SNP ID:
sf0610444216(Gbrowse)
Chromosome: chr06 Position: 10444216 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.87% | 13.13% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610444216 | C->A | LOC_Os06g17970(LOC_Os06g17970.1) | UTR_5_PRIME |