Detailed information of SNP:
|
SNP ID:
sf0610445204(Gbrowse)
Chromosome: chr06 Position: 10445204 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 60.57% | 39.43% |
| All Indica | 764 | 75.65% | 24.35% |
| All Japonica | 497 | 46.88% | 53.12% |
| Aus | 62 | 4.84% | 95.16% |
| Indica I | 365 | 84.93% | 15.07% |
| Indica II | 200 | 81.00% | 19.00% |
| Indica Intermediate | 199 | 53.27% | 46.73% |
| Temperate Japonica | 335 | 53.13% | 46.87% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610445204 | G->C | LOC_Os06g17970(LOC_Os06g17970.1) | INTRON |