Detailed information of SNP:
|
SNP ID:
sf0610446619(Gbrowse)
Chromosome: chr06 Position: 10446619 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 68.83% | 31.17% |
| All Indica | 786 | 92.37% | 7.63% |
| All Japonica | 496 | 41.73% | 58.27% |
| Aus | 64 | 6.25% | 93.75% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 200 | 86.50% | 13.50% |
| Temperate Japonica | 334 | 52.99% | 47.01% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610446619 | C->T | LOC_Os06g17970(LOC_Os06g17970.1) | UTR_5_PRIME |