Detailed information of SNP:
|
SNP ID:
sf0610448311(Gbrowse)
Chromosome: chr06 Position: 10448311 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.46% | 7.54% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610448311 | A->T | LOC_Os06g17970(LOC_Os06g17970.1) | Non-Synonymous SNP |