Detailed information of SNP:
|
SNP ID:
sf0610449048(Gbrowse)
Chromosome: chr06 Position: 10449048 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 62.87% | 37.13% |
| All Indica | 797 | 83.06% | 16.94% |
| All Japonica | 497 | 40.04% | 59.96% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610449048 | T->A | LOC_Os06g17970(LOC_Os06g17970.1) | INTRON |