Detailed information of SNP:
|
SNP ID:
sf0610450702(Gbrowse)
Chromosome: chr06 Position: 10450702 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.73% | 29.27% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610450702 | A->G | INTERGENIC | None |