Detailed information of SNP:
|
SNP ID:
sf0610452712(Gbrowse)
Chromosome: chr06 Position: 10452712 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 93.34% | 6.66% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 493 | 88.24% | 11.76% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610452712 | T->A | INTERGENIC | None |