Detailed information of SNP:
|
SNP ID:
sf0610453108(Gbrowse)
Chromosome: chr06 Position: 10453108 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 62.64% | 37.36% |
| All Indica | 782 | 36.06% | 63.94% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 361 | 32.69% | 67.31% |
| Indica II | 211 | 23.70% | 76.30% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610453108 | C->T | INTERGENIC | None |