Detailed information of SNP:
|
SNP ID:
sf0610454706(Gbrowse)
Chromosome: chr06 Position: 10454706 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 84.32% | 15.68% |
| All Indica | 787 | 95.04% | 4.96% |
| All Japonica | 494 | 63.77% | 36.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 333 | 48.05% | 51.95% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610454706 | G->C | INTERGENIC | None |