Detailed information of SNP:
|
SNP ID:
sf0610455183(Gbrowse)
Chromosome: chr06 Position: 10455183 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.86% | 39.14% |
| All Indica | 793 | 35.56% | 64.44% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 31.02% | 68.98% |
| Indica II | 210 | 24.76% | 75.24% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610455183 | C->T | INTERGENIC | None |