Detailed information of SNP:
|
SNP ID:
sf0610455977(Gbrowse)
Chromosome: chr06 Position: 10455977 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 87.47% | 12.53% |
| All Indica | 794 | 86.02% | 13.98% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 207 | 62.32% | 37.68% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610455977 | C->T | INTERGENIC | None |