Detailed information of SNP:
|
SNP ID:
sf0610458096(Gbrowse)
Chromosome: chr06 Position: 10458096 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 58.92% | 41.08% |
| All Indica | 794 | 30.73% | 69.27% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 25.87% | 74.13% |
| Indica II | 211 | 18.48% | 81.52% |
| Indica Intermediate | 208 | 51.92% | 48.08% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610458096 | T->C | INTERGENIC | None |