Detailed information of SNP:
|
SNP ID:
sf0610458124(Gbrowse)
Chromosome: chr06 Position: 10458124 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 58.77% | 41.23% |
| All Indica | 796 | 30.53% | 69.47% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 25.60% | 74.40% |
| Indica II | 211 | 18.48% | 81.52% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610458124 | T->C | INTERGENIC | None |