Detailed information of SNP:
|
SNP ID:
sf0610458768(Gbrowse)
Chromosome: chr06 Position: 10458768 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.88% | 49.12% |
| All Indica | 798 | 83.33% | 16.67% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610458768 | A->G | INTERGENIC | None |