Detailed information of SNP:
|
SNP ID:
sf0610461486(Gbrowse)
Chromosome: chr06 Position: 10461486 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 59.90% | 40.10% |
| All Indica | 787 | 31.89% | 68.11% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 369 | 27.10% | 72.90% |
| Indica II | 210 | 20.48% | 79.52% |
| Indica Intermediate | 208 | 51.92% | 48.08% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610461486 | G->A | INTERGENIC | None |