Detailed information of SNP:
|
SNP ID:
sf0610461487(Gbrowse)
Chromosome: chr06 Position: 10461487 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.58% | 42.42% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610461487 | C->T | INTERGENIC | None |