Detailed information of SNP:
|
SNP ID:
sf0610461544(Gbrowse)
Chromosome: chr06 Position: 10461544 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 52.07% | 47.93% |
| All Indica | 761 | 22.34% | 77.66% |
| All Japonica | 493 | 92.70% | 7.30% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 356 | 23.03% | 76.97% |
| Indica II | 207 | 18.84% | 81.16% |
| Indica Intermediate | 198 | 24.75% | 75.25% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610461544 | C->T | INTERGENIC | None |