Detailed information of SNP:
|
SNP ID:
sf0610461855(Gbrowse)
Chromosome: chr06 Position: 10461855 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 88.35% | 11.65% |
| All Indica | 796 | 83.54% | 16.46% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 86.33% | 13.67% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610461855 | T->C | LOC_Os06g17990(LOC_Os06g17990.1) | Synonymous |