Detailed information of SNP:
|
SNP ID:
sf0610462016(Gbrowse)
Chromosome: chr06 Position: 10462016 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.83% | 45.17% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 373 | 88.20% | 11.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610462016 | G->A | INTERGENIC | None |