Detailed information of SNP:
|
SNP ID:
sf0610462150(Gbrowse)
Chromosome: chr06 Position: 10462150 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 54.58% | 45.42% |
| All Indica | 790 | 88.10% | 11.90% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 371 | 88.14% | 11.86% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610462150 | A->G | INTERGENIC | None |