Detailed information of SNP:
|
SNP ID:
sf0610462203(Gbrowse)
Chromosome: chr06 Position: 10462203 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 66.36% | 33.64% |
| All Indica | 790 | 91.01% | 8.99% |
| All Japonica | 497 | 35.81% | 64.19% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 335 | 42.39% | 57.61% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610462203 | T->C | INTERGENIC | None |