Detailed information of SNP:
|
SNP ID:
sf0610462540(Gbrowse)
Chromosome: chr06 Position: 10462540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 57.89% | 42.11% |
| All Indica | 794 | 79.09% | 20.91% |
| All Japonica | 496 | 32.06% | 67.94% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 334 | 40.42% | 59.58% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610462540 | A->G | INTERGENIC | None |