Detailed information of SNP:
|
SNP ID:
sf0610464784(Gbrowse)
Chromosome: chr06 Position: 10464784 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 65.55% | 34.45% |
| All Indica | 784 | 85.20% | 14.80% |
| All Japonica | 496 | 43.15% | 56.85% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 364 | 86.54% | 13.46% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610464784 | A->G | INTERGENIC | None |