Detailed information of SNP:
|
SNP ID:
sf0610466786(Gbrowse)
Chromosome: chr06 Position: 10466786 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 62.81% | 37.19% |
| All Indica | 762 | 53.54% | 46.46% |
| All Japonica | 497 | 70.82% | 29.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 361 | 48.20% | 51.80% |
| Indica II | 201 | 48.26% | 51.74% |
| Indica Intermediate | 200 | 68.50% | 31.50% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610466786 | C->T | INTERGENIC | None |