Detailed information of SNP:
|
SNP ID:
sf0610467696(Gbrowse)
Chromosome: chr06 Position: 10467696 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 59.44% | 40.56% |
| All Indica | 703 | 46.94% | 53.06% |
| All Japonica | 496 | 71.37% | 28.63% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 339 | 38.64% | 61.36% |
| Indica II | 177 | 41.81% | 58.19% |
| Indica Intermediate | 187 | 66.84% | 33.16% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610467696 | T->C | INTERGENIC | None |