Detailed information of SNP:
|
SNP ID:
sf0610467827(Gbrowse)
Chromosome: chr06 Position: 10467827 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.27% | 41.73% |
| All Indica | 795 | 76.23% | 23.77% |
| All Japonica | 497 | 37.63% | 62.37% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 209 | 55.98% | 44.02% |
| Temperate Japonica | 335 | 52.54% | 47.46% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610467827 | C->T | INTERGENIC | None |