Detailed information of SNP:
|
SNP ID:
sf0610468220(Gbrowse)
Chromosome: chr06 Position: 10468220 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 56.04% | 43.96% |
| All Indica | 781 | 73.50% | 26.50% |
| All Japonica | 496 | 36.49% | 63.51% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 366 | 78.96% | 21.04% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 203 | 53.69% | 46.31% |
| Temperate Japonica | 335 | 51.94% | 48.06% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610468220 | C->A | INTERGENIC | None |