Detailed information of SNP:
|
SNP ID:
sf0610468501(Gbrowse)
Chromosome: chr06 Position: 10468501 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 87.07% | 12.93% |
| All Indica | 796 | 81.28% | 18.72% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610468501 | C->T | LOC_Os06g18000(LOC_Os06g18000.1) | UTR_3_PRIME |