Detailed information of SNP:
|
SNP ID:
sf0610468554(Gbrowse)
Chromosome: chr06 Position: 10468554 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 86.62% | 13.38% |
| All Indica | 787 | 80.56% | 19.44% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 203 | 63.55% | 36.45% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610468554 | A->G | LOC_Os06g18000(LOC_Os06g18000.1) | UTR_3_PRIME |