Detailed information of SNP:
|
SNP ID:
sf0610470673(Gbrowse)
Chromosome: chr06 Position: 10470673 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 52.72% | 47.28% |
| All Indica | 795 | 22.26% | 77.74% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 9.33% | 90.67% |
| Indica II | 212 | 16.51% | 83.49% |
| Indica Intermediate | 208 | 51.44% | 48.56% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610470673 | C->T | INTERGENIC | None |