Detailed information of SNP:
|
SNP ID:
sf0610470912(Gbrowse)
Chromosome: chr06 Position: 10470912 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.56% | 46.44% |
| All Indica | 799 | 23.78% | 76.22% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 10.93% | 89.07% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610470912 | C->T | INTERGENIC | None |