Detailed information of SNP:
|
SNP ID:
sf0610471242(Gbrowse)
Chromosome: chr06 Position: 10471242 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 57.50% | 42.50% |
| All Indica | 796 | 78.14% | 21.86% |
| All Japonica | 495 | 31.72% | 68.28% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 334 | 40.72% | 59.28% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610471242 | T->C | INTERGENIC | None |