Detailed information of SNP:
|
SNP ID:
sf0610471974(Gbrowse)
Chromosome: chr06 Position: 10471974 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.17% | 46.83% |
| All Indica | 799 | 22.90% | 77.10% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610471974 | A->G | INTERGENIC | None |