Detailed information of SNP:
|
SNP ID:
sf0610472707(Gbrowse)
Chromosome: chr06 Position: 10472707 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.87% | 26.13% |
| All Indica | 799 | 83.48% | 16.52% |
| All Japonica | 495 | 55.15% | 44.85% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 333 | 42.04% | 57.96% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610472707 | G->T | INTERGENIC | None |