Detailed information of SNP:
|
SNP ID:
sf0610474123(Gbrowse)
Chromosome: chr06 Position: 10474123 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 76.18% | 23.82% |
| All Indica | 798 | 84.09% | 15.91% |
| All Japonica | 497 | 59.56% | 40.44% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610474123 | T->C | INTERGENIC | None |