Detailed information of SNP:
|
SNP ID:
sf0610475028(Gbrowse)
Chromosome: chr06 Position: 10475028 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 76.12% | 23.88% |
| All Indica | 792 | 83.59% | 16.41% |
| All Japonica | 497 | 60.16% | 39.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 208 | 59.13% | 40.87% |
| Temperate Japonica | 335 | 46.57% | 53.43% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610475028 | C->T | INTERGENIC | None |