Detailed information of SNP:
|
SNP ID:
sf0610475285(Gbrowse)
Chromosome: chr06 Position: 10475285 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 74.26% | 25.74% |
| All Indica | 798 | 81.58% | 18.42% |
| All Japonica | 497 | 58.95% | 41.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610475285 | G->A | INTERGENIC | None |