Detailed information of SNP:
|
SNP ID:
sf0610475419(Gbrowse)
Chromosome: chr06 Position: 10475419 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.44% | 24.56% |
| All Indica | 797 | 82.94% | 17.06% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610475419 | A->T | INTERGENIC | None |