Detailed information of SNP:
|
SNP ID:
sf0610486028(Gbrowse)
Chromosome: chr06 Position: 10486028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.45% | 40.55% |
| All Indica | 798 | 32.46% | 67.54% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 24.33% | 75.67% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610486028 | C->T | INTERGENIC | None |