Detailed information of SNP:
|
SNP ID:
sf0610486065(Gbrowse)
Chromosome: chr06 Position: 10486065 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.50% | 47.50% |
| All Indica | 799 | 22.65% | 77.35% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 9.33% | 90.67% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610486065 | G->T | INTERGENIC | None |