Detailed information of SNP:
|
SNP ID:
sf0610486100(Gbrowse)
Chromosome: chr06 Position: 10486100 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 68.67% | 31.33% |
| All Indica | 797 | 73.65% | 26.35% |
| All Japonica | 494 | 55.67% | 44.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 333 | 45.05% | 54.95% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610486100 | T->C | INTERGENIC | None |