Detailed information of SNP:
|
SNP ID:
sf0610486199(Gbrowse)
Chromosome: chr06 Position: 10486199 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 77.76% | 22.24% |
| All Indica | 795 | 86.16% | 13.84% |
| All Japonica | 494 | 60.53% | 39.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 333 | 47.75% | 52.25% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610486199 | C->T | INTERGENIC | None |