Detailed information of SNP:
|
SNP ID:
sf0610486849(Gbrowse)
Chromosome: chr06 Position: 10486849 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1245 | 89.72% | 10.28% |
| All Indica | 780 | 98.85% | 1.15% |
| All Japonica | 373 | 76.68% | 23.32% |
| Aus | 43 | 51.16% | 48.84% |
| Indica I | 366 | 98.91% | 1.09% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 97.54% | 2.46% |
| Temperate Japonica | 261 | 81.99% | 18.01% |
| Tropical Japonica | 70 | 64.29% | 35.71% |
| Japonica Intermediate | 42 | 64.29% | 35.71% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610486849 | C->T | INTERGENIC | None |